基因组蛋白质组与生物信息学报.英文版.

1.Predicting Protein Subcellular Localization: Past, Present, and FuturePierre D(o)nnes，Annette H(o)glund

2.A Brief Review of Computational Gene Prediction MethodsZhuo Wang，Yazhu Chen，Yixue Li

3.Granulometric Analysis of Spots in DNA Microarray ImagesBehara Latha，Balasubramanian Venkatesh

4.EST-based Analysis of Gene Expression in the Porcine BrainBing Zhang，Wu Jin，Yanwu Zeng，Zhixi Su，Songnian Hu，Jun Yu

5.Fast Tree Search for A Triangular Lattice Model of Protein FoldingXiaomei Li，Nengchao Wang

6.A Novel Method for N-terminal Acetylation PredictionYing Liu，Yuanlie Lin

7.Timeline of Genomics (1977-2004)

1.Science and ScientificityZong-Liang Xu，Xin Zhang

2.Classifying Genomic Sequences by Sequence Feature AnalysisZhi-Hua Liu，Dian Jiao，Xiao Sun

3.LZ Complexity Distance of DNA Sequences and Its Application in Phylogenetic Tree ReconstructionBin Li，Yi-Bing Li，Hong-Bo He

4.Characterizing the Microenvironment Surrounding Phosphorylated Protein SitesShi-Cai Fan，Xue-Gong Zhang

5.A Contact Energy Function Considering Residue Hydrophobic Environment and Its Application in Protein Fold RecognitionMo-Jie Duan，Yan-Hong Zhou

6.A Branch and Bound Algorithm for the Protein Folding Problem in the HP Lattice ModelMao Chen，Wen-Qi Huang 7.Preprocessing of Tandem Mass Spectrometric Data Based on Decision Tree ClassificationJing-Fen Zhang，Si-Min He，Jin-Jin Cai，Xing-Jun Cao，Rui-Xiang Sun，Yan Fu，Rong Zeng，Wen Gao

8.Constructing Support Vector Machine Ensembles for Cancer Classification Based on Proteomic ProfilingYong Mao，Xiao-Bo Zhou，Dao-Ying Pi，You-Xian Sun

9.Prediction and Classification of Human G-protein Coupled Receptors Based on Support Vector MachinesYun-Fei Wang，Huan Chen，Yan-Hong Zhou

10.Predicting the Coupling Specificity of G-protein Coupled Receptors to G-proteins by Support Vector MachinesCui-Ping Guan，Zhen-Ran Jiang，Yan-Hong Zhou

11.Identifying G-protein Coupled Receptors Using Weighted Levenshtein Distance and Nearest Neighbor MethodJian-Hua Xu

1.How to Push Forward Science and Technology in China--About Research, Development, and Technological InnovationDah-You Maa，Xuan-Yi Zou

2.Proteome Analysis of Rice Root Proteins Regulated by GibberellinSetsuko Komatsu，Hirosato Konishi

3.Preliminary DNA Identification for the Tsunami Victims in ThailandYa-Jun Deng，Yuan-Zhe Li，Xiao-Guang Yu，Li Li，Dong-Ying Wu，Jun Zhou，Tian-You Man，Guang Yang，Jiang-Wei Yan，Da-Qing Cai，Jian Wang，Huan-Ming Yang，Sheng-Bin Li，Jun Yu

4.Neighboring-Nucleotide Effects on the Mutation Patterns of the Rice GenomeHui Zhao，Qi-Zhai Li，Chang-Qing Zeng，Huan-Ming Yang，Jun Yu

5.Non-destructive Analysis of the Nuclei of Transgenic Living Cells Using Laser Tweezers and Near-infrared Raman Spectroscopic TechniqueWei Tang，Ronald J. Newton，Chang-An Xie，Yong-Qing Li，Nicki Whitley

6.A Comprehensive Software Suite for the Analysis of cDNAsKazuharu Arakawa，Haruo Suzuki，Kosuke Fujishima，Kenji Fujimoto，Sho Ueda，Motomu Matsui，Masaru Tomita

7.An Improved Biclustering Algorithm and Its Application to Gene Expression Spectrum AnalysisHua Qu，Liu-Pu Wang，Yan-Chun Liang，Chun-Guo Wu

8.Systems Biology Brings Life Sciences Closer--Report on the China-UK Systems Biology Workshop 2005Ming Chen 9.Instruction for Authors

1.Characterization of Binding Sites of Eukaryotic Transcription FactorsJiang Qian，Jimmy Lin，Donald J. Zack

2.Topological Properties of Protein-Protein and Metabolic Interaction Networks of Drosophila melanogasterThanigaimani Rajarathinam，Yen-Han Lin

3.Normalization Using Weighted Negative Second Order Exponential Error Functions (NeONORM) Provides Robustness Against Asymmetries in Comparative Transcriptome Profiles and Avoids False CallsSebastian Noth，Guillaume Brysbaert，Arndt Benecke

4.Improve Survival Prediction Using Principal Components of Gene Expression DataYi-Jing Shen，Shu-Guang Huang

5.Predicting the Subcellular Localization of Human Proteins Using Machine Learning and Exploratory Data AnalysisGeorge K. Acquaah-Mensah，Sonia M. Leach，Chittibabu Guda

6.PHProteomicDB: A Module for Two-dimensional Gel Electrophoresis Database Creation on Personal Web SitesPascal Pernet，Arnaud Bruneel，Bruno Baudin，Michel Vaubourdolle

1.A Content-Centric Organization of the Genetic CodeJun Yu

2.A Brief Review of Short Tandem Repeat MutationHao Fan，Jia-You Chu

3.Analysis of Pathway Activity in Primary Tumors and NCI60 Cell Lines Using Gene Expression Profiling DataXing-Dong Feng，Shu-Guang Huang，Jian-Yong Shou，Bi-Rong Liao，Jonathan M. Yingling，Xiang Ye，Xi Lin，Lawrence M. Gelbert，Eric W. Su，Jude E. Onyia，Shu-Yu Li

4.Alternative Splicing and Expression Profile Analysis of Expressed Sequence Tags in Domestic PigLiang Zhang，Lin Tao，Lin Ye，Ling He，Yuan-Zhong Zhu，Yue-Dong Zhu，Yan Zhou

parative Analysis of the 100kb Region Containing the Pi-kh Locus Between indica and japonica Rice LinesS.P. Kumar，V. Dalal，N.K. Singh，T.R. Sharma

6.Generation of Synthetic Transcriptome Data with Defined Statistical Properties for the Development and Testing of New Analysis MethodsGuillaume Brysbaert，Sebastian Noth，Arndt Benecke

7.Restauro-G: A Rapid Genome Re-Annotation System for Comparative GenomicsSatoshi Tamaki，Kazuharu Arakawa，Nobuaki Kono，Masaru Tomita

8.Genetic Polymorphisms of Nine X-STR Loci in Four Population Groups from Inner Mongolia, ChinaQiao-Fang Hou，Bin Yu，Sheng-Bin Li

9.Genetic Analysis of 15 STR Loci in Chinese Han Population from West ChinaYa-Jun Deng，Jiang-Wei Yan，Xiao-Guang Yu，Yuan-Zhe Li，Hao-Fang Mu，Yan-Qing Huang，Xiao-Tie Shi，Wei-Min Sun

10.A Survey of the Availability of Primary Bioinformatics Web ResourcesTrias Thireou，George Spyrou，Vassilis Atlamazoglou

1.Fuzzy Logic for Elimination of Redundant Information of Microarray DataEdmundo Bonilla Huerta，Béatrice Duval，Jin-Kao Hao

2.Gene Expression Data Classification Using Consensus Independent Component AnalysisChtm-Hou Zheng，De-Shuang Huang，Xiang-Zhen Kong，Xing-Ming Zhao

3.A DSRPCL-SVM Approach to Informative Gene AnalysisWei Xiong，Zhibin Cai，Jinwen Ma

4.Identification of Tumor Evolution Patterns by Means of Inductive Logic ProgrammingVitoantonio Bevilacqua，Patrizia Chiarappa，Giuseppe Mastronardi，Filippo Menolascina，Angelo Paradiso，Stefania Tommasi

5.Hidden Markov Models Incorporating Fuzzy Measures and Integrals for Protein Sequence Identification and AlignmentNiranjan P.Bidargaddi，Madlhu Chetty，Joarder Kamruzzaman

6.Applying Intelligent Computing Techniques to Modeling Biological Networks from Expression DataWei-Po Lee，Kung-Cheng Yang

7.Identification of MicroRNA Precursors with Support Vector Machine and String KernelJian-Hua Xu，Fei Li，Qiu-Feng Sun

1.A Brief Review on the Mechanisms of miRNA RegulationYimei Cai，Xiaomin Yu，Songnian Hu，Jun Yu

2.Nucleosomal Context of Binding Sites Influences Transcription Factor Binding Affinity and Gene RegulationZhiming Dai，Xianhua Dai，Qian Xiang，Jihua Feng

3.Significant Deviations in the Configurations of Homologous Tandem Repeats in Prokaryotic GenomesShintaro Hirayama，Satoshi Mizuta

4.Codon Usage Biases of Transposable Elements and Host Nuclear Genes in Arabidopsis thaliana and Oryza sativaJia Jia，Qingzhong Xue

5.In Silico Characterization and Homology Modeling of Thylakoid-bound Ascorbate Peroxidase from a Drought Tolerant Wheat CultivarA.Katiyar，S.K.Lenka，K.Lakshmi，V.Chinnusamy，K.C.Bansal

6.Large-Scale Analyses of Glycosylation in CellulasesFengfeng Zhou，Victor Olman，Ying Xu

7.A Modified Ant Colony Optimization Algorithm for Tumor Marker Gene SelectionHualong Yu，Guochang Gu，Haibo Liu，Jing Shen，Jing Zhao

1.The Most Redundant Sequences in Human CpG Island Library Are Derived from Mitochondrial GenomeXimiao He，Shu Tao，Jing Jin，Songnian Hu，Jun Yu

2.Sequence Signatures of Nucleosome Positioning in Caenorhabditis elegansKaifu Chen，Lei Wang，Meng Yang，Jiucheng Liu，Chengqi Xin，Songnian Hu，Jun Yu

3.Genome-Wide Survey and Evolutionary Analysis of Trypsin Proteases in Apicomplexan ParasitesAylan Farid Arenas，Juan Felipe Osorio-Méndez，Andres Julian Gutierrez，Jorge E.Gomez-Marin

putational Identification of miRNAs and Their Target Genes from Expressed Sequence Tags of Tea(Camellia sinensis)G.R.Prabu，A.K.A.Mandal

5.ZiF-Predict: A Web Tool for Predicting DNA-Binding Specificity in C2H2 Zinc Finger ProteinsBhuvan Molparia，Kanav Goyal，Anita Sarkar，Sonu Kumar，Durai Sundar

6.PsRNA:A Computing Engine for the Comparative Identification of Putative Small RNA Locations within Intergenic RegionsJayavel Sridhar，Govindaraj Sowmiya，Kanagaraj Sekar，Ziauddin Ahamed Rafi

7.BiDiBlast:Comparative Genomics Pipeline for the PCJo(a)o M.G.C.F.de Almeida

1.Transcriptomics and Proteomics in the Study of H1N1 2009Lijun Zhang，Xiaojun Zhang，Qing Ma，Fang Ma，Honghao Zhou

2.Proteomic Analysis of Bovine NucleolusAmrutlal K.Patel，Doug Olson，Suresh K. Tikoo

3.A Novel Interpretation of Structural Dot Plots of Genomes Derived from the Analysis of Two Strains of Neisseria meningitidisWilfred R.Cuff，Venkata R.S.K.Duvvuri，Binhua Liang，Bhargavi Duvvuri，Gillian E.Wu，Jianhong Wu，Raymond S.W.Tsang

4.Regulation of U6 Promoter Activity by Transcriptional Interference in Viral Vector-Based RNAiLinghu Nie，Meghna Das Thakur，Yumei Wang，Qin Su，Yongliang Zhao，Yunfeng Feng

5.Follow the Leader: Preference for Specific Amino Acids Directly Following the Initial Methionine in Proteins of Different OrganismsRonen Shemesh，Amit Novik，Yossi Cohen

6.Structural and Functional Analysis of NS1 and NS2 Proteins of H1N1 SubtypeParveen Salahuddin，Asad U.Khan

7.Mining Gene Expression Profiles: An Integrated Implementation of Kernel Principal Component Analysis and Singular Value DecompositionFerran Reverter，Esteban Vegas，Pedro Sánchez

1.Host Proteome Research in HIV InfectionLijun Zhang，Xiaojun Zhang，Qing Ma，Honghao Zhou

2.Characterization of Evolutionarily Conserved MicroRNAs in AmphioxusLei Wang，Lan Jiang，Songnian Hu，Yejun Wang HtTp://

3.Study of Completed Archaeal Genomes and Proteomes: Hypothesis of Strong Mutational AT Pressure Existed in Their Common PredecessorVladislav V.Khrustalev，Eugene V.Barkovsky

4.Whole-Cell Protein Identification Using the Concept of Unique PeptidesYupeng Zhao，Yen-Han Lin

5.In silico Analysis of Sequential,Structural and Functional Diversity of Wheat Cystatins and Its Implication in Plant DefenseShriparna Dutt，V.K.Singh，Soma S.Marla，Anil Kumar

6.Quality Assessment of Transcriptome Data Using Intrinsic Statistical PropertiesGuillaume Brysbaert，Fran(c)ois-Xavier Pellay，Sebastian Noth，Arndt Benecke

7.A Modified Enrichment Method to Construct Microsatellite Library from Plateau Pika Genome(Ochotona curzoniae)Jianing Geng，Kexin Li，Yanming Zhang，Songnian Hu

8.KaKs_Calculator 2.0: A Toolkit Incorporating Gamma-Series Methods and Sliding Window StrategiesDapeng Wang，Yubin Zhang，Zhang Zhang，Jiang Zhu，Jun Yu

1.In-depth cDNA Library Sequencing Provides Quantitative Gene Expression Profiling in Cancer Biomarker Discovery

2.DNA Copy Number Aberrations in Breast Cancer by Array Comparative Genomic Hybridization

parative Analysis of Protein-Protein Interactions in Cancer-Associated Genes 25

4.Bioinformatic Comparison of Bacterial Secretomes

5.Role of Positive Selection Pressure on the Evolution of H5N1 Hemagglutinin

6.Phylogenetic Analysis of the Neuraminidase Gene Reveals that the H5N1 Strains Prevalent in Chickens During 2006 Bird Flu Outbreaks in Two Regions of Maharashtra, India Are Genetically Different

7.A Method for Identification of Selenoprotein Genes in Archaeal Genomes

8.GALT Protein Database, a Bioinformatics Resource for the Manage-ment and Analysis of Structural Features of a Galactosemia-related Protein and Its Mutants

1.In silico Analysis of the Potential Infection Mechanisms of Magnaporthe grisea from Horizontal Gene Transfer HypothesisChunyang Li，Ying Wang，Hao Peng，Hejiao Bian，Mingwei Min，Longfei Chen，Qian Liu，Jinku Bao

putational Analysis of Cysteine Proteases(Clan CA, Family C1)of Leishmania major to Find Potential Epitopic RegionsBabak Saffari，Hassan Mohabatkar

3.Evolutionary Implication of Outer Membrane Lipoprotein-Encoding Genes ompL1, lipL32 and lipL41 of Pathogenic Leptospira SpeciesK. Vedhagiri，K. Natarajaseenivasan，P. Chellapandi，S.G. Prabhalaran，Joseph Selvin，S. Sharma，P. Vijayachari

4.Screening and Assessing 11 Mycobacterium tuberculosis Proteins as Potential Serodiagnostical Markers for Discriminating TB Patients from BCG VaccineesGuoqiang Zhang，Lingxia Zhang，Mingcheng Zhang，Linlin Pan，Fengyu Wang，Jun Huang，Guoli Li，Jun Yu，Songnian Hu

5.How Do Variable Substitution Rates Influence Ka and Ks Calculations?Dapeng Wang，Song Zhang，Fuhong He，Jiang Zhu，Songnian Hu，Jun Yu

6.How Many 3D Structures Do We Need to Train a Predictor?Pantelis G. Bagos，Georgios N. Tsaousis，Stavros J. Hamodrakas

7.PBOND: Web Server for the Prediction of Proline and Non-Proline cis / trans IsomerizationKonstantinos P. Exarchos，Themis P. Exarchos，Costas Papaloukas，Anastassios N. Troganis，Dimitrios I. Fotiadis

8.3D Genome Tuner: Compare Multiple Circular Genomes in a 3D ContextQi Wang，Qun Liang，Xiuqing Zhang

1.Identification of Conserved Regulatory Elements in Mammalian Promoter Regions: A Case Study Using the PCK1 PromoterGeorge E. Liu，Matthew T. Weirauch，Curtis P. Van Tassell，Robert W. Li，Tad S. Sonstegard，Lakshmi K. Matukumalli，Erin E. Connor，Richard W. Hanson，Jianqi Yang

parative Genomic Study Reveals a Transition from TA Richness in Invertebrates to GC Richness in Vertebrates at CpG Flanking Sites: An Indication for Context-Dependent Mutagenicity of Methylated CpG SitesYong Wang，Frederick C.C. Leung

3.Phylogenetic Analysis of Brine Shrimp (Artemia) in China Using DNA BarcodingWeiwei Wang，Qibin Luo，Haiyan Guo，Peter Bossier，Gilbert Van Stappen，Patrick Sorgeloos，Naihong Xin，Qishi Sun，Songnian Hu，Jun Yu

4.Identification of Semaphorin 5A Interacting Protein by Applying Apriori Knowledge and Peptide Complementarity Related to Protein Evolution and StructureAnguraj Sadanandam，Michelle L. Varney，Rakesh K. Singh

5.SCGPred: A Score-based Method for Gene Structure Prediction by Combining Multiple Sources of EvidenceXiao Li，Qingan Ren，Yang Weng，Haoyang Cai，Yunmin Zhu，Yizheng Zhang

6.MOF: An R Function to Detect Outlier MicroarraySong Yang，Xiang Guo，Hai Hu

7.In Silico Analysis of Crop Science: Report on the First China-UK Workshop on Chips, Computers and CropsMing Chen，Andrew Harrison

1.A Scenario on the Stepwise Evolution of the Genetic CodeJing-Fa Xiao，Jun Yu

2.Evaluating Peptide Mass Fingerprinting-based Protein IdentificationSenthilkumar Damodaran，Troy D. Wood，Priyadharsini Nagarajan，Richard A. Rabin

3.Model-based Comparative Prediction of Transcription-Factor Binding Motifs in Anabolic Responses in BoneAndy B. Chen，Kazunori Hamamura，Guohua Wang，Weirong Xing，Subburaman Mohan，Hiroki Yokota，Yunlong Liu

4.Reconstruction of Pathways Associated with Amino Acid Metabolism in Human MitochondriaPurnima Guda，Chittibabu Guda，Shankar Subramaniam

5.Prediction of Protein-Protein Interactions Using Protein Signature ProfilingMahmood A. Mahdavi，Yen-Han Lin

6.U7 snRNAs: A Computational SurveyMania Marz，Axel Mosig，B(a)rbel M.R. Stadler，Peter F. Stadler

putational Prediction of Rice (Oryza sativa) miRNA TargetsSunil Archak，J. Nagaraju

8.Construction, Characterization, and Chromosomal Mapping of a Fosmid Library of the White-Cheeked Gibbon (Nomascus leucogenys)Liping Chen，Jianping Ye，Yan Liu，Jinghuan Wang，Weiting Su，Fengtang Yang，Wenhui Nie

9.Transcriptome and Proteome Expressions Involved in Insulin Resistance in Muscle and Activated T-Lymphocytes of Patients with Type 2 DiabetesFrankie B. Stentz，Abbas E. Kitabchi

10.Mycobacterial PE_PGRS Proteins Contain Calcium-Binding Motifs with Parallel β-roll FoldsNandita Bachhawat，Balvinder Singh

11.A Modified T-test Feature Selection Method and Its Application on the HapMap Genotype DataNina Zhou，Lipo Wang

12.Oxypred: Prediction and Classification of Oxygen-Binding ProteinsS. Muthukrishnan，Aarti Garg，G.P.S. Raghava 13.FASMA: A Service to Format and Analyze Sequences in Multiple AlignmentsSusan Costantini，Giovanni Colonna，Angelo M. Facchiano

14.Automated SNP Genotype Clustering Algorithm to Improve Data Completeness in High-Throughput SNP Genotyping Datasets from Custom ArraysEdward M. Smith，Jack Littrell，Michael Olivier